Purpose/Significance To meet the urgent needs of mass data analysis and application in the biomedical field and solve the problems such as the lack of standardized management of data analysis and utilization tools. Method/Process The paper comprehensively analyzes and summarizes the construction ideas, methods and technical realization of the tool standardization collection, management and shared utilization of ELIXIR's biomedical data tool service platform system. Some suggestions are put forward from the aspects of ecosystem construction, management norms, operation environment management, benchmark testing and verification, technology renewal strategy and community-driven innovation.Result/Conclusion The useful experience in the construction of ELIXIR’s data tool service platform system is learned to provide comprehensive references for the standardized management of biomedical data analysis and utilization tools and service platform construction in China.