In order to know current situations of informatization development in hospitals of Traditional Chinese Medicine (TCM) in Chongqing City, the paper investigates and analyzes the construction situations of information systems in 43 hospitals of TCM and hospitals of integrated Chinese and Western medicine in 39 districts and counties of the city, including the fund investment, personnel allocation and training, information security, use of standards, information intercommunication, current situation of information application, etc. It points out problems such as the instable fund investment, unreasonable utilization, improper personnel allocation, data standardization to be improved, etc. Also, it proposes policy suggestions.